Gene ID: Cha_U0001220.1
- Transcript_id: Cha_U0001220.1
- Location: scaffold1:424878-426252
- Strand: -
- Length: 359
NR
- IDGFH52427.1
- Annotationhypothetical protein CTEN210_08903 [Chaetoceros tenuissimus]
SwissProt
- IDsp|Q9AR27|HD6_ORYSI
- AnnotationCasein kinase II subunit alpha-2 OS=Oryza sativa subsp. indica OX=39946 GN=HD6 PE=2 SV=1
TrEMBL
- IDtr|A0A7R9VPP3|A0A7R9VPP3_9STRA
- AnnotationProtein kinase domain-containing protein OS=Pseudictyota dubia OX=2749911 GN=TDUB1175_LOCUS4988 PE=3 SV=1
GO
- IDsGO:0004674;GO:0006468;GO:0004672;GO:0005524
- Annotationmolecular_function protein serine/threonine kinase activity | biological_process protein phosphorylation | molecular_function protein kinase activity | molecular_function ATP binding
Pfam
- IDsPF00069
- AnnotationProtein kinase domain
InterPro
- IDsIPR000719;IPR008271;IPR011009;IPR017441;IPR045216
- AnnotationProtein kinase domain | Serine/threonine-protein kinase, active site | Protein kinase-like domain superfamily | Protein kinase, ATP binding site | Casein Kinase 2, subunit alpha
KOG
- IDKOG0668
- DefinationCasein kinase II, alpha subunit
- Code[TDK]
KEGG
- Gene NameCSNK2A
- Pathwayko04712;ko03008
- Pathway DefinationCircadian rhythm - plant | Ribosome biogenesis in eukaryotes
KO
- IDK03097
- LinkView details
TF
- ID--
- Link--
TargetP
- PredictionSP
- Other--
- SP0.900326
- MTP0.00041
- CTP0.000026
- LTP0.000016
- CS PositionCS pos: 36-37. VYA-DV. Pr: 0.9832
SignalP
- SignalPN
- D score0.477
- Cleavage positionNA
- 25aa cleavage scoreNA
- 25aa sequenceNA
ASAFind
- Cleavage positionNA
- 25aa cleavage scoreNA
- 25aa sequenceNA
- cleavage has [FWYL] at +1 positionNA
- SignalP cleavage site offsetNA
- 20aaTransitScoreNA
- PredictionNot plastid, SignalP negative
HECTAR
- Signal peptide score0.7399
- Signal peptide cleavage site37
- Type II signal anchor score0.1054
- Chloroplast score0.0245
- Mitochondrion score-
- Other score-
- Predicted targeting categorysignal peptide
TMHMM
- Length359
- Exp number of AAs in TMHs18.54
- Exp number, first 60 AAs18.49
- Number of predicted TMHs1
- Topologyi13-35o
Sequence
ATGCCATCCCTCCCCGCGCAGGTTTCTCAAAGATTCCTTTGGAGCTTCTTTTACTCAAATCTTATCTCTTCGCTGCTAATATTTTTGTGTGTGGACAGGGTTTACGCTGATGTGAATGTACATCGGCCAAGGGACTATTGGGACTACGAGGCACTGACTGTGAACTGGGGAGACCAGGAGGATTATGAGGTAATTAGGAAAATCGGTAGAGGAAAGTACAGCGAGGTCTTTGAGGGTGCAAACGTCAGAACCAATACAAAATGCGTCATAAAAATCCTCAAACCCGTCAAGAAGAAGAAAATCAAGCGCGAGATCAAAATTTTACAAAACATGTGCGGAGGCACCAACATAATCCAGCTCTTGGACGTTGTTCGTGATCCTCAATCCAAGACACCGTCCCTTATTTTTGAGCACGTGAACAATACCGATTTCAAAGTCCTGTATCCGACACTCTCGGACTATGATATCCGCTACTATATCTTTGAACTCCTCAAGGCACTCGACTACTGCCACTCTAACGGCGTTATGCATCGTGATGTAAAACCTCACAATGTCATGATTGATCACGAAAAGCGACAATTGCGCCTCATCGATTGGGGCCTGGCTGAATTCTACCATCCTGGGAGGGAGTACAATGTCAGAGTAGCTTCCAGATACTTCAAGGGACCCGAATTACTCGTCGATTTACAAGAGTACGACTATTCTCTCGATATGTGGAGTCTTGGATGCATGTTTGCAGGAATGATTTTTCGGAAGGAGCCATTCTTCCACGGACATGACAATTACGACCAGCTTGTAAAAATTGCTAGAGTCTTGGGAACAGAAGAGCTATTTCGCTACCTGGATACCTATGACTTGGAGCTTGATCCACATTTTGATGGAATTCTCGGAAGACACTCAAAGAAACCATGGCAAAAGTTTATCACCCCCGAGAATCAGCACTTGGTATCGGATGAAGCGATAGATTTTGTGTCCAAGTTACTGAGATACGATCATCAGGAACGTTTGACTGCCAAAGAGGCATCAACGCACCCATACTTTGCTCCTATTAGGGAAGAATCGGGAAGCTCTGGAAAGTAA
Expression (RNA-Seq)
| Comparison | ||
| Mean | 0 | 0 |
| Deviation | 0 | 0 |
| Log2FoldChange | NaN | |
| P-value | NaN | |