Gene ID: Cha_U0001700.1
- Transcript_id: Cha_U0001700.1
- Location: scaffold1:544840-551933
- Strand: -
- Length: 1428
NR
- IDCAB9520203.1
- Annotationunknown protein [Seminavis robusta]
SwissProt
- ID--
- Annotation--
TrEMBL
- IDtr|A0A7S3V501|A0A7S3V501_9STRA
- AnnotationNDC10_II domain-containing protein OS=Chaetoceros debilis OX=122233 GN=CDEB00056_LOCUS1784 PE=4 SV=1
GO
- IDsGO:0001522;GO:0003723;GO:0009451;GO:0009982
- Annotationbiological_process pseudouridine synthesis | molecular_function RNA binding | biological_process RNA modification | molecular_function pseudouridine synthase activity
Pfam
- IDsPF00849;PF00134;PF02984
- AnnotationCyclin, C-terminal domain | RNA pseudouridylate synthase | Cyclin, N-terminal domain
InterPro
- IDsIPR004367;IPR006145;IPR006671;IPR013763;IPR020103;IPR036915;IPR039361
- AnnotationCyclin, C-terminal domain | Pseudouridine synthase, RsuA/RluA-like | Cyclin, N-terminal | Cyclin-like domain | Pseudouridine synthase, catalytic domain superfamily | Cyclin-like superfamily | Cyclin
KOG
- ID--
- Defination--
- Code--
KEGG
- Gene NameCYCD3
- Pathwayko04075
- Pathway DefinationPlant hormone signal transduction
KO
- IDK14505
- LinkView details
TF
- ID--
- Link--
TargetP
- PredictionOTHER
- Other--
- SP0.000607
- MTP0.005474
- CTP0.000003
- LTP0.000009
- CS Position--
SignalP
- SignalPN
- D score0.102
- Cleavage positionNA
- 25aa cleavage scoreNA
- 25aa sequenceNA
ASAFind
- Cleavage positionNA
- 25aa cleavage scoreNA
- 25aa sequenceNA
- cleavage has [FWYL] at +1 positionNA
- SignalP cleavage site offsetNA
- 20aaTransitScoreNA
- PredictionNot plastid, SignalP negative
HECTAR
- Signal peptide score0.0606
- Signal peptide cleavage site-
- Type II signal anchor score0.023
- Chloroplast score-
- Mitochondrion score0.0976
- Other score0.9024
- Predicted targeting categoryother localisation
TMHMM
- Length1428
- Exp number of AAs in TMHs0.19
- Exp number, first 60 AAs--
- Number of predicted TMHs--
- Topologyo
Sequence
ATGAGACCTGTTTTTGGCAGACACACCGTTGCATCTGAATCAAAGGAGTCAGAGGAAGTGTCAAATTTGCAACTAAACCTTGGCGCTGCACAACAGGAACAAATAAATAAAACTACGCGCCTCAATATTGATGCCAATACAGTGAAAAAACATAACAGGAACATCACAAAATTCTATAAATGGTTTTTAATAGAAGTTGAAAAAAACCCTGATTTTTTTGAAGGCAATATCAACTCACTATTTGTTGCTATTAACTATGAAGCTTTTGATGACAAGGAAGAGCTTTTGGAATCTGAATTGCGATCAGGTGAAAAAACGTATCGGTCCTTTGATATTGTGTATGAGAACCTTCCACCTCAACTTGTGAAATTGTATTGCACGTCACCCGAAAGGAAATATAAATGGACTATTAAAGCAGGACAAATCACTGGACCCATGTTGAATTCCGAAGGGAAGCATTTAAAAAATGGTTTTGATGTGCACCGTAAATTCCTGGAGTCAATTGATTTTGGTAGACGAGTAGCCAAAGCAAAGTTCCCAAAGAATTATGTACTGGATATTGAGAAATTCAAGAGTGGATTGAAGAAGGAGAATGCTAAAAACAAATCTGATGGTGATATTCTAGAACGTGAAGCTGATCCGATTCCTTTTGATCTCTATCGGTTCATGTGTGAGTCAGCCATAAACTCTGGAAATGCATTTTGGTGGCTATTTTCAATTCTTCAGTGGTCTTGTTTAGGCAGATGTCAGAATATCGATGATTTAACTTTTCGAAATTTGAGCCTTGGTTCAGATTCAATAATTGTAAAGTTTGACGCAACAAAAATGGATAAGACAGGTGACAAATGTTCACCCAAAAATTGCTATGCCAATCCACTTGATTTCATACTATGCATTAACACTGCTCTGGCAGTGTACTTGAGCCTGGAGAAGAACAGCACATGGAGTAAGGAAAATAAGTCATTCTTGTTCATCAACCCTGGTGCAAAGCAAGGCTCTGCAGCATCACGGTACACGGATTCCATACAATCATGGGTGAATCAGAATTATGAGAGAATTGCATCATTTATGAGAATTGAGCACTTAGATCCATATTCAGTTCGAAAAGGAAGTGCAACATATGCATCTTCAGGCACCACAATGCCACCCCCAATTCCATCCCTTTTCCATCGAGGTGAATGGAGCCTTGGTGTCATTCTGGATATTTACTGGAAGTTTGCTGAGGCTGGTGATCATTACTTAGGTCGTATACTTGCTGGATTAGATCCATGCAGCGATAAATTTGGAATACTACCACCACACTTTACTGTTCCTATTGAGAATGACATCGTGCAGGAAGGTATGAATCTCTGCTTTGGGAACATATATAGAATTGAACATGACCAAAATAATGAAGGAAACTCATTTGTGAAAGGAATTTTGGGTCGTTGTCTCGCTAGCTTGGTGTATCATGCCGATGAATTACAGAGTTTAATAGCAAAACGTGGTGATACCCATCCATTCAACAATCTTACCCTTCTCCAACATCCAACTTTGCTTGAACAGTTGAAATTATTGGTGACAACTGAGCCAACAGAAAATATCATGAGTAAAGCAACTGGCGTTCCACCTCACACAGAGACAATTAAGGAATTACGTACAATAATAGATATGTTCCTAGACTTCAAGCAGAAGTGGGAGGAAGGGTTTGAGAGTTTGAAAAATGTGGTCAATGATGCAATAGAACAGAAAATGGCATCGAATGGTCACCTCTCATCACAATCACTAACTGATGCAATGGATACTTTATACAAAAAATGGGAATGTACCTTCGAATCAAAGTTTCATCAATTTGCACAGAAATATGGACTAGATAGAAATGGTTCGGGAAGTAACAACACAGATAACAATACGATGAACAATAGAAATGAAGAATCACAGCATGATTTAGAGGGTCGATTCCAAACATATTGCTGGAATGGAAAGCTTGGAATGCATGTACCACCAGGATTTGATCTACCAGCTAGCACAAAATTATTTAGTGCATGGAGCCTTTGGATAAATGGGAATCCAGGTCATAAATCATTTGATAATTCTGGATCTAATGTACTTGTATCGACTCCCATACGACCATTTCAATTGTTCACATCTAATGCAGTTCCCCAATCAGTTTGGAAGAAATTAAAGTCAGGATGGTTCAAAGTATTAAATATGATGATGGAAGCTCCTGAATTATCAGCTCTAGATAGGCTCATAAAGACGAAGGGTGGAGCATTCAGTATTGACGAGATCAAAGGATTTTATGAGAAAGGTGTCACCCATGTGCTGAATCAAGTCGAGTACATCAAGGCATTGAATTCAGCCTCATGGACGGTCACAACATGGTCAGGCCGTGTCAGTTTTAAGCAGATAATGGAAAAGGGGACTGATGCAGACAAAAATCGTTTACCAGATGAGACGAGGTACAACCAGCCTCATCGACAGAAACGGAAGATGCAGCAGTCCAACATGCATGTTTCCTTAATGCGTCCCATACTATCCGTTTTGCAAAGAGATGTCAATACCTCAAGTGAACTTATAAAGCAGCAAAGAAGAGATTTGTTAAAGAATGAGAATGACAATTCTATATTCAAGCATGTGGATGCTGAATTTCGTCATGATCCTAAACGTATTGATTTGCATCGGCAGCTACAACCTGTTGAATTGCTTGCCTTGGGATCTATTTGGTACCTTCCGGGGGATGCTCCTAAAGATCCAGGTCTTGGAGAGAAACCCACCAGACTCGAGGTGAAACATCTCACTTGCCCACTCAAACCAGGTGATTATCTCAGAGTGCATCATACACCTAGAAGATTCCCAGAGGTTCATCGTGTGGATTGGTCTAGAAAAGTGAATGAGTCGAATTTGGAGGAACCTAATCCAGGTGTCATTGTTTACGAAAACGTTGACAAGGGATATTTGGTTGTCAACAAACCTTCAGGTGTGCCAGTGCATCCAACTGTGGATAACATACTGGAAAATGTTGTGGCAGCTGTTGGGCGAGCACTGGTATCCAAACAGAAAAATAATCATGAATGGATTTTAAAGGTTTCCAATAATGTTACAGATTGCAAGACATCGTCATCAGGGATTATGGATGAGGAGGACATTACACTGCCTAGTCGTCGAAAACAGCAAAGCGGTGGCCATCAAAAGAACAGGAAGAAGAAAAAAGTGGATCCACTCATTTATGTAGCGACTCCTCAGAGACTTGATCACAATACATCAGGATTATTTGTGGTGGCGACAAGGAAAGAATTTGCTGCGTACTTTGCCAAGCTTCTTCGAGTGAAAACAGAAGCTCATCTCAGGAGTGGGGTGGTGTCCAATAGTAATAATAGTCCTTCATTTGGACAAACAGTAGATGGCAATGTTCAAAAACGATACAGATGTTTGGTATGCATTCAACCAGGGAATAGGAAAAATGAAAATGAATGTAACGCTTCTTCAAAGCGAGGAGGCGCCAATGATGACTCCTCTGCCTCTAATAAACAAGTAGTGGAACAAACTGTGGCCAATGAATCTTGGCGTGAGAGGATCTGCGAATGGTTGTACAATGTTATTGATCATTTCAATTACAGTCGCGAAATCGTTTGTATTACAATGAATTATCTTGACCGATACGCATCTATATGTAGCCAGCAACACAAGGACCACGGTGCGAACAGAATGACTTATAAGCTATACCAGCTAATAGCAGTTTCGTCCCTCAATATCGTACTCAAGATCCACGAATCAAAGTACAATCACCTGCCATTATTGATTGAACTCAGCCGGAACTTCTTTACCCACCAACACATACTTGCCATGGAAATGTCCATCTTGAAGGGTTTATCGTGGAAACTGTCGCCTCCTACTCCGCTATCTTTTATGTATCACCTGATCAAGCTGTTGCCAAAAGAAGACTTTTTCCAAGGAAATATTGACGCCTTGAAAGGATCTGCACAATTCTTAATAGAGTTAAGTGCATGCGACTACTTCTTTGTGTGCGTCAAGCCTTCATCTATCGCCTACGCCTCTCTTTTGATCTCCATTGATCGCATGTCATCCTCTATCAGCAAGAAAAAACAAGGTGAGGCCATGAAACTCGCTCTTGTAAAAAACTTAGAGGAAACTTTCCGTTTGACCTACTCGGATGAAGTGAGACAATGTCAAGTGCAGCTTCAAGAAATATTTCAAGCGGGGGGATACGAAAATGACGGTTTCTATTCCCAGCGAACCTTGTCCTCCCCGGTATCCTCGGCAGTCGTTCTGTCATCCTCGGCGTGA
Expression (RNA-Seq)
| Comparison | ||
| Mean | 0 | 0 |
| Deviation | 0 | 0 |
| Log2FoldChange | NaN | |
| P-value | NaN | |